Coding Ahead
CasePilot
Medical Coding Assistant
Case2Code
Search and Code Lookup Tool
RedactPHI
HIPAA-Compliant PHI Redaction
DetectICD10CM
ICD-10-CM Code Detection
Log in Register free account
1 code page views remaining. Guest accounts are limited to 1 page view. Register free account to get 5 more views.
Log in Register free account

Official Description

Cytogenomic neoplasia (genome-wide) microarray analysis, interrogation of genomic regions for copy number and loss-of-heterozygosity variants for chromosomal abnormalities

© Copyright 2025 American Medical Association. All rights reserved.

Common Language Description

Cytogenomic microarray analysis (CMA) for neoplasia is a sophisticated laboratory technique utilized to detect and characterize genetic alterations associated with various hematological neoplasms, including conditions such as B-cell acute lymphoblastic leukemia. This procedure focuses on identifying clonal copy number imbalances and loss of heterozygosity variants, which are critical for diagnosing chromosomal abnormalities linked to blood cancers. The analysis begins with the extraction of DNA from the patient's peripheral blood or bone marrow, which is then labeled and hybridized to a microarray. This microarray contains probes that correspond to specific genomic regions, allowing for a comprehensive interrogation of the genome. After hybridization, the microarray is scanned to measure the intensity of the signals emitted, which are then compared to a reference dataset. This comparison enables the identification of copy number changes and regions exhibiting loss of heterozygosity. The results of the analysis are compiled into a report that provides essential information for the physician, aiding in diagnosis, prognosis, and therapeutic decision-making. Notably, CMA has the advantage of detecting genetic changes that may not be visible through traditional chromosomal analysis or fluorescence in situ hybridization (FISH) studies, making it a valuable tool in the assessment of complex genetic abnormalities across the genome.

© Copyright 2025 Coding Ahead. All rights reserved.

1. Indications

The cytogenomic microarray analysis (CMA) is indicated for the evaluation of hematological neoplasms, particularly in cases where there is a suspicion of chromosomal abnormalities. The following conditions and symptoms may warrant the use of this procedure:

  • B-cell acute lymphoblastic leukemia - This test is crucial for diagnosing and characterizing genetic changes associated with this type of leukemia.
  • Other hematological malignancies - CMA can be utilized for various blood cancers to identify chromosomal abnormalities that may influence treatment and prognosis.
  • Unexplained cytopenias - In cases where patients present with low blood cell counts without a clear diagnosis, CMA can help uncover underlying genetic issues.
  • Relapsed or refractory disease - For patients whose cancer has returned or is resistant to treatment, CMA can provide insights into new genetic alterations that may guide further therapeutic options.

2. Procedure

The procedure for cytogenomic microarray analysis involves several critical steps to ensure accurate results. The following outlines the detailed procedural steps:

  • Step 1: Sample Collection - DNA is extracted from the patient's peripheral blood or bone marrow. This sample serves as the basis for the analysis, providing the necessary genetic material for examination.
  • Step 2: DNA Labeling - The extracted DNA is labeled with fluorescent dyes. This labeling is essential for the subsequent hybridization process, as it allows for the detection of the DNA on the microarray.
  • Step 3: Hybridization - The labeled DNA is then hybridized to a microarray that contains probes for specific genomic regions. This step allows the DNA to bind to the probes, which are designed to detect particular sequences associated with chromosomal abnormalities.
  • Step 4: Scanning - After hybridization, the microarray is scanned to measure the intensity of the fluorescent signals emitted from the bound DNA. This data is crucial for determining the presence of copy number changes and loss of heterozygosity.
  • Step 5: Data Analysis - The intensity signals are compared to a reference dataset to identify any deviations that indicate genetic abnormalities. This analysis helps in quantifying the number of copy changes and pinpointing regions with loss of heterozygosity.
  • Step 6: Reporting - A comprehensive report is generated, summarizing the findings of the analysis. This report is provided to the physician, offering critical insights for diagnosis, prognosis, and treatment planning.

3. Post-Procedure

After the cytogenomic microarray analysis is completed, the physician will review the report generated from the data analysis. The results may indicate specific genetic alterations that could influence the patient's treatment plan and prognosis. It is essential for the healthcare team to discuss the findings with the patient, including any implications for further testing or therapeutic options. Additionally, follow-up appointments may be necessary to monitor the patient's condition and response to treatment based on the insights gained from the CMA. There are typically no specific post-procedure care requirements for the patient, as the analysis is performed on a laboratory sample rather than requiring any invasive procedures.

Short Descr CYTOGENOMIC NEO MICRORA ALYS
Medium Descr CYTOGENOMIC NEOPLASIA MICROARRAY ANALYSIS
Long Descr Cytogenomic neoplasia (genome-wide) microarray analysis, interrogation of genomic regions for copy number and loss-of-heterozygosity variants for chromosomal abnormalities
Status Code Statutory Exclusion (from MPFS, may be paid under other methodologies)
Global Days XXX - Global Concept Does Not Apply
PC/TC Indicator (26, TC) 9 - Not Applicable
Multiple Procedures (51) 9 - Concept does not apply.
Bilateral Surgery (50) 9 - Concept does not apply.
Physician Supervisions 09 - Concept does not apply.
Assistant Surgeon (80, 82) 9 - Concept does not apply.
Co-Surgeons (62) 9 - Concept does not apply.
Team Surgery (66) 9 - Concept does not apply.
Diagnostic Imaging Family 99 - Concept Does Not Apply
CLIA Waived (QW) No
APC Status Indicator Service Paid under Fee Schedule or Payment System other than OPPS
Type of Service (TOS) 5 - Diagnostic Laboratory
Berenson-Eggers TOS (BETOS) none
MUE 1
90 Reference (outside) laboratory: when laboratory procedures are performed by a party other than the treating or reporting physician or other qualified health care professional, the procedure may be identified by adding modifier 90 to the usual procedure number.
Date
Action
Notes
2020-01-01 Added Code added.
2019-11-01 Changed Medium descriptor changed.
CasePilot

Get instant expert-level medical coding assistance.

Ask about:
CPT Codes Guidelines Modifiers Crosswalks NCCI Edits Compliance Medicare Coverage
Example: "What is CPT code 99213?" or "Guidelines for E/M services"