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Official Description

MSH6 (mutS homolog 6 [E. coli]) (eg, hereditary non-polyposis colorectal cancer, Lynch syndrome) gene analysis; known familial variants

© Copyright 2025 American Medical Association. All rights reserved.

Common Language Description

The CPT® Code 81299 pertains to the molecular genetic testing of the MSH6 gene, specifically focusing on known familial variants. This testing is crucial for identifying specific mutations within the MSH6 gene that may increase an individual's risk of developing hereditary non-polyposis colorectal cancer (HNPCC), also known as Lynch syndrome. The MSH6 gene is located on chromosome 2 and plays a vital role in the DNA repair process. It is part of a protein complex that works alongside the MSH1/PMS2 complex to detect and repair errors that occur during DNA replication. When these errors are not corrected, they can accumulate over time, leading to uncontrolled cell growth and the formation of tumors. HNPCC is the most prevalent cancer associated with mutations in the MSH6 gene, but it is important to note that tumors can also develop in various other organs, including the endometrium, ovaries, prostate, stomach, small intestine, liver, gallbladder duct, upper urinary tract, brain, and skin. Lynch syndrome is characterized by an increased risk of cancer, particularly colorectal and endometrial cancers, often presenting at an older age compared to other genetic mutations such as MLH1 and MSH2. The incidence of endometrial cancer is notably higher in individuals with MSH6 mutations. Additionally, certain mutations have been identified with increased frequency in Ashkenazi Jewish populations, with affected individuals typically experiencing the onset of tumors later in life. The testing process for MSH6 mutations involves identifying point mutations or single nucleotide polymorphisms, which are the most common types of mutations found in this gene. Furthermore, immunohistochemistry may be utilized to assess the extent of gene expression loss. Family members of individuals with identified MSH6 mutations are encouraged to undergo testing for known familial variants, and those who test positive should receive genetic counseling and clinical supervision. Overall, the analysis provided by CPT® Code 81299 is essential for understanding genetic predispositions to certain cancers and guiding appropriate clinical management.

© Copyright 2025 Coding Ahead. All rights reserved.

1. Indications

The molecular genetic testing represented by CPT® Code 81299 is indicated for individuals who have a known familial variant of the MSH6 gene. This testing is particularly relevant for:

  • Hereditary Non-Polyposis Colorectal Cancer (HNPCC) - Individuals with a family history of HNPCC or Lynch syndrome are prime candidates for this testing, as it helps identify those at increased risk of developing colorectal and other associated cancers.
  • Family Members of Affected Individuals - Relatives of individuals diagnosed with MSH6 mutations should be tested for known familial variants to determine their own risk of cancer.

2. Procedure

The procedure for CPT® Code 81299 involves several key steps to ensure accurate identification of known familial variants in the MSH6 gene:

  • Sample Collection - A biological sample, typically blood or saliva, is collected from the individual undergoing testing. This sample contains the DNA necessary for analysis.
  • DNA Extraction - The DNA is extracted from the collected sample using standard laboratory techniques to isolate the genetic material for further analysis.
  • Mutation Analysis - The extracted DNA is analyzed specifically for known familial variants of the MSH6 gene. This may involve techniques such as polymerase chain reaction (PCR) and sequencing to identify any mutations present.
  • Interpretation of Results - The results of the genetic analysis are interpreted by a qualified geneticist or molecular pathologist, who will determine if the individual carries the known familial variant associated with increased cancer risk.
  • Genetic Counseling - If a familial variant is identified, genetic counseling is recommended to discuss the implications of the results, potential risks, and options for clinical supervision and management.

3. Post-Procedure

After the completion of the molecular genetic testing for MSH6 gene variants, several post-procedure considerations are important. Individuals who test positive for known familial variants should receive genetic counseling to understand their risk of developing associated cancers and the implications for family members. Clinical supervision may be offered to monitor health and implement preventive measures as necessary. Additionally, individuals may be advised to undergo regular screenings for colorectal and other cancers, as early detection is crucial for effective management. It is also important for healthcare providers to document the results and any follow-up actions taken in the patient's medical record to ensure continuity of care.

Short Descr MSH6 GENE KNOWN VARIANTS
Medium Descr MSH6 GENE ANALYSIS KNOWN FAMILIAL VARIANTS
Long Descr MSH6 (mutS homolog 6 [E. coli]) (eg, hereditary non-polyposis colorectal cancer, Lynch syndrome) gene analysis; known familial variants
Status Code Statutory Exclusion (from MPFS, may be paid under other methodologies)
Global Days XXX - Global Concept Does Not Apply
PC/TC Indicator (26, TC) 9 - Not Applicable
Multiple Procedures (51) 9 - Concept does not apply.
Bilateral Surgery (50) 9 - Concept does not apply.
Physician Supervisions 09 - Concept does not apply.
Assistant Surgeon (80, 82) 9 - Concept does not apply.
Co-Surgeons (62) 9 - Concept does not apply.
Team Surgery (66) 9 - Concept does not apply.
Diagnostic Imaging Family 99 - Concept Does Not Apply
CLIA Waived (QW) No
APC Status Indicator Service Paid under Fee Schedule or Payment System other than OPPS
Type of Service (TOS) 5 - Diagnostic Laboratory
Berenson-Eggers TOS (BETOS) T1H - Lab tests - other (non-Medicare fee schedule)
MUE 1
CCS Clinical Classification 234 - Pathology
GA Waiver of liability statement issued as required by payer policy, individual case
Date
Action
Notes
2012-01-01 Added Added
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