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Official Description

Hereditary colon cancer-related disorders (eg, Lynch syndrome, PTEN hamartoma syndrome, Cowden syndrome, familial adenomatosis polyposis), genomic sequence analysis panel, 5 or more genes, interrogation for sequence variants and copy number variants

© Copyright 2025 American Medical Association. All rights reserved.

Common Language Description

The CPT® Code 81435 pertains to molecular genetic testing specifically designed to identify mutations associated with hereditary colon cancer-related disorders. These disorders include conditions such as Lynch syndrome, PTEN hamartoma syndrome, Cowden syndrome, and familial adenomatosis polyposis. The testing involves a genomic sequence analysis panel that examines five or more genes, focusing on the interrogation for both sequence variants and copy number variants. This type of genetic testing is crucial for confirming a cancer diagnosis and for identifying family members who may be at risk of developing hereditary colon cancer. The process begins with the collection of a biological specimen, which can be obtained from blood, saliva, or stool, through a separately reportable procedure. The specimen is then subjected to a comprehensive genomic sequencing procedure that evaluates the genetic material in its entirety or near entirety. The panel specifically targets key genes, including the adenomatous polyposis coli (APC) gene, which is linked to familial adenomatosis polyposis, and several mismatch repair genes such as MLH1, MSH2, and MSH6, which are associated with Lynch syndrome. Additionally, the MUTYH gene, which can be monoallelic or biallelic, is examined for its association with polyposis, along with the PTEN gene for variant mutations. Other relevant genes that may be included in the analysis are BMPR1A, CDH1, SMAD4, and STK11. The targeted gene segments undergo enrichment through capture hybridization, followed by the application of massively parallel sequencing and/or microarray analysis to the target regions. This advanced methodology allows for the detection of gene mutations by comparing gene segments to identify similarities or differences. The testing can reveal genetic markers and variations in the genetic sequence, including point mutations or single nucleotide polymorphisms. Various techniques are employed to interrogate sequence variants or copy number variants, which assist in determining large structural rearrangements and interpreting the effects of these variants on proteins, amino acids, or clinical phenotypes.

© Copyright 2025 Coding Ahead. All rights reserved.

1. Indications

The molecular genetic testing represented by CPT® Code 81435 is indicated for the following hereditary colon cancer-related disorders:

  • Lynch syndrome - A hereditary condition that increases the risk of various cancers, particularly colorectal cancer, due to mutations in mismatch repair genes.
  • PTEN hamartoma syndrome - A genetic disorder characterized by the development of hamartomas and an increased risk of certain cancers, including breast and thyroid cancers.
  • Cowden syndrome - A genetic condition associated with multiple noncancerous, tumor-like growths and an increased risk of breast, thyroid, and other cancers.
  • Familial adenomatosis polyposis - A hereditary syndrome that leads to the development of numerous polyps in the colon and rectum, significantly increasing the risk of colorectal cancer.

2. Procedure

The procedure for CPT® Code 81435 involves several critical steps to ensure accurate genomic analysis:

  • Specimen Collection - A biological specimen, which may be blood, saliva, or stool, is collected from the patient. This step is essential as it provides the genetic material needed for testing. The collection must be performed through a separately reportable procedure to ensure proper documentation and billing.
  • Genomic Sequencing - The collected specimen undergoes a genomic sequencing procedure that evaluates the genetic material in totality or near totality. This comprehensive analysis is crucial for identifying mutations associated with hereditary colon cancer disorders.
  • Target Gene Analysis - The genomic sequence analysis panel specifically interrogates five or more genes known to be associated with hereditary colon cancer. This includes genes such as APC, MLH1, MSH2, MSH6, MUTYH, and PTEN, among others. The targeted gene segments are enriched using capture hybridization techniques to enhance the accuracy of the analysis.
  • Massively Parallel Sequencing and Microarray Analysis - Advanced methodologies, including massively parallel sequencing and/or microarray analysis, are applied to the enriched target regions. These techniques allow for the detection of gene mutations by comparing gene segments and identifying similarities or differences.
  • Variant Identification - The analysis focuses on identifying genetic markers and variations, such as point mutations or single nucleotide polymorphisms. Different techniques are utilized to interrogate sequence variants or copy number variants, which help in determining large structural rearrangements and interpreting the effects of these variants on proteins, amino acids, or clinical phenotypes.

3. Post-Procedure

After the completion of the genomic sequence analysis, the results are typically reviewed and interpreted by a qualified healthcare professional. The findings can provide critical information regarding the presence of mutations associated with hereditary colon cancer disorders. Patients may receive genetic counseling to discuss the implications of the test results, including the potential need for further testing or surveillance for at-risk family members. Follow-up care may involve additional screenings or preventive measures based on the identified genetic risks. It is essential for healthcare providers to document the results and any subsequent recommendations in the patient's medical record to ensure continuity of care and appropriate management of any identified risks.

Short Descr HERED COLON CA-RLATD DO 5+
Medium Descr HEREDITARY COLON CA-RELATED DO GEN SEQ ALYS 5+
Long Descr Hereditary colon cancer-related disorders (eg, Lynch syndrome, PTEN hamartoma syndrome, Cowden syndrome, familial adenomatosis polyposis), genomic sequence analysis panel, 5 or more genes, interrogation for sequence variants and copy number variants
Status Code Statutory Exclusion (from MPFS, may be paid under other methodologies)
Global Days XXX - Global Concept Does Not Apply
PC/TC Indicator (26, TC) 9 - Not Applicable
Multiple Procedures (51) 9 - Concept does not apply.
Bilateral Surgery (50) 9 - Concept does not apply.
Physician Supervisions 09 - Concept does not apply.
Assistant Surgeon (80, 82) 9 - Concept does not apply.
Co-Surgeons (62) 9 - Concept does not apply.
Team Surgery (66) 9 - Concept does not apply.
Diagnostic Imaging Family 99 - Concept Does Not Apply
CLIA Waived (QW) No
APC Status Indicator Service Paid under Fee Schedule or Payment System other than OPPS
Type of Service (TOS) 5 - Diagnostic Laboratory
Berenson-Eggers TOS (BETOS) T1H - Lab tests - other (non-Medicare fee schedule)
MUE 1

This is a primary code that can be used with these additional add-on codes.

0130U Add-on Code APC A Hereditary colon cancer disorders (eg, Lynch syndrome, PTEN hamartoma syndrome, Cowden syndrome, familial adenomatosis polyposis), targeted mRNA sequence analysis panel (APC, CDH1, CHEK2, MLH1, MSH2, MSH6, MUTYH, PMS2, PTEN, and TP53) (List separately in addition to code for primary procedure)
0134U Add-on Code APC A Hereditary pan cancer (eg, hereditary breast and ovarian cancer, hereditary endometrial cancer, hereditary colorectal cancer), targeted mRNA sequence analysis panel (18 genes) (List separately in addition to code for primary procedure)
0162U Add-on Code APC A Hereditary colon cancer (Lynch syndrome), targeted mRNA sequence analysis panel (MLH1, MSH2, MSH6, PMS2) (List separately in addition to code for primary procedure)
90 Reference (outside) laboratory: when laboratory procedures are performed by a party other than the treating or reporting physician or other qualified health care professional, the procedure may be identified by adding modifier 90 to the usual procedure number.
GW Service not related to the hospice patient's terminal condition
GZ Item or service expected to be denied as not reasonable and necessary
XU Unusual non-overlapping service, the use of a service that is distinct because it does not overlap usual components of the main service
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2025-01-01 Changed Short, Medium, and Long Descriptions changed.
2016-01-01 Changed Description Changed
2015-01-01 Added Added
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