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Official Description

F5 (coagulation factor V) (eg, hereditary hypercoagulability) gene analysis, Leiden variant

© Copyright 2025 American Medical Association. All rights reserved.

Common Language Description

Molecular genetic testing is a critical procedure used to identify specific mutations within the F5 (coagulation Factor V) gene that are associated with hereditary hypercoagulability. The focus of this testing is on the Leiden variant, which is characterized by a particular mutation known as c.1601G>A or pArg534Gln. This mutation results in the inactivation of Factor V by activated Protein C (APC), a key component in the regulation of the clotting cascade. Factor V serves as a cofactor that facilitates the activation of Factor X, which subsequently activates thrombin. Thrombin plays a vital role in converting fibrinogen into fibrin, thereby forming a clot. However, when the F5 gene is mutated, Factor V remains in an active state, leading to an overproduction of thrombin and an excess of fibrin, which ultimately results in hypercoagulation or an increased tendency to form clots. The Leiden variant is classified as an autosomal dominant trait, meaning that the presence of just one mutated gene (heterozygous) can increase an individual's risk of developing venous thrombosis, particularly in the lower extremities. This variant is notably prevalent among the Eurasian population, with approximately 5% of Caucasians in North America carrying the heterozygous mutation and about 1 in 5000 individuals possessing the homozygous mutation. In cases of homozygous mutations, women may face heightened risks of venous thrombosis when using oral contraceptives, as well as an increased likelihood of adverse pregnancy outcomes such as miscarriage, stillbirth, fetal growth retardation, and placental abruption. Consequently, molecular genetic testing is recommended for women with a history of infertility or fetal loss, as well as for both men and women who have experienced deep vein thrombosis or pulmonary emboli.

© Copyright 2025 Coding Ahead. All rights reserved.

1. Indications

The molecular genetic testing for the F5 (coagulation Factor V) gene analysis, specifically for the Leiden variant, is indicated in the following scenarios:

  • History of Infertility or Fetal Loss - Women who have experienced infertility or recurrent fetal loss may be tested to determine if a genetic predisposition to hypercoagulability is contributing to these issues.
  • Deep Vein Thrombosis (DVT) - Individuals who develop DVT, particularly those with no clear risk factors, may undergo testing to identify the presence of the Leiden variant, which increases the risk of clot formation.
  • Pulmonary Emboli - Patients who have experienced pulmonary emboli may be tested to assess for the Leiden variant, as it is associated with an increased risk of thrombotic events.

2. Procedure

The procedure for conducting the F5 gene analysis involves several key steps:

  • Sample Collection - A blood sample is collected from the patient, which serves as the source of DNA for the genetic analysis. This is typically done through venipuncture, where a needle is inserted into a vein to draw blood.
  • DNA Extraction - The collected blood sample undergoes a process of DNA extraction, where the cellular components are broken down to isolate the DNA. This step is crucial for ensuring that the genetic material is pure and suitable for analysis.
  • Polymerase Chain Reaction (PCR) - The extracted DNA is subjected to PCR, a technique that amplifies specific segments of DNA, allowing for the detection of the Leiden variant. This step is essential for generating enough DNA to analyze the presence of the mutation.
  • Sequencing or Genotyping - Following amplification, the DNA is sequenced or genotyped to identify the specific mutation in the F5 gene. This step determines whether the Leiden variant is present and whether the individual is heterozygous or homozygous for the mutation.
  • Result Interpretation - The results of the genetic analysis are interpreted by a qualified healthcare professional, who will assess the presence of the Leiden variant and its implications for the patient's health and risk of thrombotic events.

3. Post-Procedure

After the molecular genetic testing for the F5 gene analysis, patients may receive counseling regarding the results and their implications. If the Leiden variant is identified, healthcare providers may discuss preventive measures and management strategies to reduce the risk of thrombotic events. This may include lifestyle modifications, monitoring for symptoms of thrombosis, and potential pharmacological interventions. Additionally, patients with a positive result may be advised on the implications for family members, as the condition is inherited in an autosomal dominant manner. Follow-up appointments may be scheduled to monitor the patient's health and address any concerns related to the findings of the genetic test.

Short Descr F5 GENE
Medium Descr F5 COAGULATION FACTOR V ANAL LEIDEN VARIANT
Long Descr F5 (coagulation factor V) (eg, hereditary hypercoagulability) gene analysis, Leiden variant
Status Code Statutory Exclusion (from MPFS, may be paid under other methodologies)
Global Days XXX - Global Concept Does Not Apply
PC/TC Indicator (26, TC) 9 - Not Applicable
Multiple Procedures (51) 9 - Concept does not apply.
Bilateral Surgery (50) 9 - Concept does not apply.
Physician Supervisions 09 - Concept does not apply.
Assistant Surgeon (80, 82) 9 - Concept does not apply.
Co-Surgeons (62) 9 - Concept does not apply.
Team Surgery (66) 9 - Concept does not apply.
Diagnostic Imaging Family 99 - Concept Does Not Apply
CLIA Waived (QW) No
APC Status Indicator Service Paid under Fee Schedule or Payment System other than OPPS
Type of Service (TOS) 5 - Diagnostic Laboratory
Berenson-Eggers TOS (BETOS) T1H - Lab tests - other (non-Medicare fee schedule)
MUE 1
CCS Clinical Classification 234 - Pathology
90 Reference (outside) laboratory: when laboratory procedures are performed by a party other than the treating or reporting physician or other qualified health care professional, the procedure may be identified by adding modifier 90 to the usual procedure number.
59 Distinct procedural service: under certain circumstances, it may be necessary to indicate that a procedure or service was distinct or independent from other non-e/m services performed on the same day. modifier 59 is used to identify procedures/services, other than e/m services, that are not normally reported together, but are appropriate under the circumstances. documentation must support a different session, different procedure or surgery, different site or organ system, separate incision/excision, separate lesion, or separate injury (or area of injury in extensive injuries) not ordinarily encountered or performed on the same day by the same individual. however, when another already established modifier is appropriate it should be used rather than modifier 59. only if no more descriptive modifier is available, and the use of modifier 59 best explains the circumstances, should modifier 59 be used. note: modifier 59 should not be appended to an e/m service. to report a separate and distinct e/m service with a non-e/m service performed on the same date, see modifier 25.
GA Waiver of liability statement issued as required by payer policy, individual case
GW Service not related to the hospice patient's terminal condition
XU Unusual non-overlapping service, the use of a service that is distinct because it does not overlap usual components of the main service
XS Separate structure, a service that is distinct because it was performed on a separate organ/structure
GZ Item or service expected to be denied as not reasonable and necessary
26 Professional component: certain procedures are a combination of a physician or other qualified health care professional component and a technical component. when the physician or other qualified health care professional component is reported separately, the service may be identified by adding modifier 26 to the usual procedure number.
91 Repeat clinical diagnostic laboratory test: in the course of treatment of the patient, it may be necessary to repeat the same laboratory test on the same day to obtain subsequent (multiple) test results. under these circumstances, the laboratory test performed can be identified by its usual procedure number and the addition of modifier 91. note: this modifier may not be used when tests are rerun to confirm initial results; due to testing problems with specimens or equipment; or for any other reason when a normal, one-time, reportable result is all that is required. this modifier may not be used when other code(s) describe a series of test results (eg, glucose tolerance tests, evocative/suppression testing). this modifier may only be used for laboratory test(s) performed more than once on the same day on the same patient.
GX Notice of liability issued, voluntary under payer policy
GY Item or service statutorily excluded, does not meet the definition of any medicare benefit or, for non-medicare insurers, is not a contract benefit
SY Persons who are in close contact with member of high-risk population (use only with codes for immunization)
Date
Action
Notes
2014-01-01 Changed Code description changed.
2012-01-01 Added Added
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