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Official Description

IKBKAP (inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein) (eg, familial dysautonomia) gene analysis, common variants (eg, 2507+6T>C, R696P)

© Copyright 2025 American Medical Association. All rights reserved.

Common Language Description

Molecular genetic testing, specifically for the IKBKAP gene, is a critical procedure aimed at identifying mutations that can lead to familial dysautonomia. The IKBKAP gene provides essential instructions for the production of the IKAP protein, which is a component of a six-protein elongation complex. This complex interacts with enzymes that are vital for transcription, the process through which genetic information is transferred from DNA to the cellular machinery responsible for protein synthesis. When there are two copies of the mutated IKBKAP gene present in an individual's cells, the splicing process that creates the blueprint for the IKAP protein is disrupted. This disruption results in an inconsistent production of the IKAP protein, which is particularly detrimental to brain cells that rely on adequate levels of this protein for proper function. Familial dysautonomia is inherited in an autosomal recessive manner, meaning that an individual must inherit mutations from both parents to develop the disorder. Those who inherit the mutation from only one parent are considered carriers and typically do not exhibit symptoms. The disorder is most prevalent among individuals of Ashkenazi Jewish descent, particularly those from Central and Eastern Europe. The IKBKAP gene is located on chromosome 9, with the most common mutations being IVS20(+6TC), also represented as 2507+6T>C, which accounts for nearly 99% of cases, and R696P. Familial dysautonomia significantly impacts the autonomic nervous system, which governs involuntary bodily functions such as breathing, digestion, and heart rate, as well as the sensory nervous system, which is responsible for sensations like pain and temperature. Symptoms of this disorder typically manifest in infancy or early childhood and can include a range of serious health issues, such as difficulty maintaining body temperature, poor feeding, recurrent pneumonia, and growth retardation. The severity of the disorder can lead to a significantly reduced life expectancy, with approximately half of those affected not surviving past the age of 40. Therefore, molecular genetic testing is crucial for individuals exhibiting symptoms of familial dysautonomia or those with a family history of the condition.

© Copyright 2025 Coding Ahead. All rights reserved.

1. Indications

The molecular genetic testing for the IKBKAP gene is indicated in the following scenarios:

  • Symptoms of Familial Dysautonomia Individuals presenting with clinical symptoms associated with familial dysautonomia, which may include difficulty maintaining normal body temperature, poor feeding, recurrent pneumonia, poor muscle tone, growth retardation, poor balance, frequent injuries due to altered pain perception, scoliosis, bone fractures, kidney and heart problems, and abnormal blood pressure responses.
  • Family History Individuals with a family history of familial dysautonomia, particularly those with known carriers or affected relatives, may also be candidates for testing to determine their genetic status.

2. Procedure

The procedure for molecular genetic testing of the IKBKAP gene involves several key steps:

  • Sample Collection A biological sample, typically blood or saliva, is collected from the individual undergoing testing. This sample contains the DNA necessary for analysis.
  • DNA Extraction The DNA is extracted from the collected sample using laboratory techniques that isolate the genetic material from other cellular components.
  • Mutation Analysis The extracted DNA is then subjected to specific tests designed to identify common variants of the IKBKAP gene, including the IVS20(+6TC) mutation and the R696P variant. This analysis may involve polymerase chain reaction (PCR) amplification and sequencing methods to detect the presence of mutations.
  • Result Interpretation Once the analysis is complete, the results are interpreted by a qualified geneticist or laboratory specialist. They will determine whether the individual carries mutations associated with familial dysautonomia.
  • Reporting The findings are compiled into a report that is provided to the healthcare provider, who will discuss the implications of the results with the patient and their family.

3. Post-Procedure

After the molecular genetic testing for the IKBKAP gene, individuals may receive counseling regarding the results, especially if a mutation is identified. Genetic counseling is essential to help patients and their families understand the implications of the findings, including the risk of familial dysautonomia and the potential for being a carrier. Follow-up care may be recommended based on the results, particularly for those diagnosed with the disorder, to manage symptoms and provide support. Additionally, individuals who are carriers may benefit from discussions about family planning and the implications for future offspring. Regular monitoring and supportive care may be necessary for those affected by familial dysautonomia to address the various health challenges associated with the condition.

Short Descr IKBKAP GENE
Medium Descr IKBKAP GENE ANALYSIS COMMON VARIANTS
Long Descr IKBKAP (inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein) (eg, familial dysautonomia) gene analysis, common variants (eg, 2507+6T>C, R696P)
Status Code Statutory Exclusion (from MPFS, may be paid under other methodologies)
Global Days XXX - Global Concept Does Not Apply
PC/TC Indicator (26, TC) 9 - Not Applicable
Multiple Procedures (51) 9 - Concept does not apply.
Bilateral Surgery (50) 9 - Concept does not apply.
Physician Supervisions 09 - Concept does not apply.
Assistant Surgeon (80, 82) 9 - Concept does not apply.
Co-Surgeons (62) 9 - Concept does not apply.
Team Surgery (66) 9 - Concept does not apply.
Diagnostic Imaging Family 99 - Concept Does Not Apply
CLIA Waived (QW) No
APC Status Indicator Service Paid under Fee Schedule or Payment System other than OPPS
Type of Service (TOS) 5 - Diagnostic Laboratory
Berenson-Eggers TOS (BETOS) T1H - Lab tests - other (non-Medicare fee schedule)
MUE 1
CCS Clinical Classification 234 - Pathology
90 Reference (outside) laboratory: when laboratory procedures are performed by a party other than the treating or reporting physician or other qualified health care professional, the procedure may be identified by adding modifier 90 to the usual procedure number.
GW Service not related to the hospice patient's terminal condition
59 Distinct procedural service: under certain circumstances, it may be necessary to indicate that a procedure or service was distinct or independent from other non-e/m services performed on the same day. modifier 59 is used to identify procedures/services, other than e/m services, that are not normally reported together, but are appropriate under the circumstances. documentation must support a different session, different procedure or surgery, different site or organ system, separate incision/excision, separate lesion, or separate injury (or area of injury in extensive injuries) not ordinarily encountered or performed on the same day by the same individual. however, when another already established modifier is appropriate it should be used rather than modifier 59. only if no more descriptive modifier is available, and the use of modifier 59 best explains the circumstances, should modifier 59 be used. note: modifier 59 should not be appended to an e/m service. to report a separate and distinct e/m service with a non-e/m service performed on the same date, see modifier 25.
GA Waiver of liability statement issued as required by payer policy, individual case
XU Unusual non-overlapping service, the use of a service that is distinct because it does not overlap usual components of the main service
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2012-01-01 Added Added
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