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Official Description

FMR1 (fragile X messenger ribonucleoprotein 1) (eg, fragile X syndrome, X-linked intellectual disability [XLID]) gene analysis; evaluation to detect abnormal (eg, expanded) alleles

© Copyright 2025 American Medical Association. All rights reserved.

Common Language Description

The CPT® Code 81243 pertains to the molecular genetic testing of the FMR1 gene, which is crucial for diagnosing conditions such as Fragile X syndrome and X-linked intellectual disability (XLID). This gene is located on the X chromosome and is responsible for coding the fragile X messenger ribonucleoprotein 1 (FMRP). The FMRP is essential for the normal development of synapses in the brain, particularly in processes related to synaptic plasticity, which is vital for learning and memory. A properly functioning FMR1 gene produces a non-mutated protein that is necessary for cognitive development and female reproductive health. Mutations in the FMR1 gene can lead to a range of disorders, including Fragile X syndrome, which is recognized as one of the most prevalent inherited forms of intellectual disability. The impact of these mutations tends to be more pronounced in males compared to females. The analysis performed under CPT® Code 81243 specifically aims to detect abnormal or expanded alleles of the FMR1 gene. The normal sequence of the FMR1 gene consists of a repeating pattern of CGG (cytosine-guanine-guanine) with interruptions of AGG (alanine-guanine-guanine), repeating between 4 and 44 times. When the CGG segment repeats between 45 and 54 times, individuals are considered to be at borderline risk for expressing characteristics of Fragile X syndrome. A pre-mutation, characterized by 55 to 200 repeats, can increase the risk of developing associated conditions such as Fragile X-associated tremor/autism syndrome (FXTAS) and premature ovarian failure. Full mutation occurs when the CGG segment exceeds 200 repetitions, leading to significant gene instability and potential silencing of the non-mutated FMR1 gene, which manifests as Fragile X syndrome. The implications of these mutations are profound, affecting cognitive abilities, reproductive health, and overall quality of life for those impacted.

© Copyright 2025 Coding Ahead. All rights reserved.

1. Indications

The FMR1 gene analysis performed under CPT® Code 81243 is indicated for the evaluation of individuals who may be at risk for Fragile X syndrome and X-linked intellectual disability (XLID). The following conditions and symptoms warrant this genetic testing:

  • Fragile X Syndrome - A genetic condition that causes a range of developmental issues, including intellectual disability and behavioral challenges.
  • X-Linked Intellectual Disability (XLID) - A form of intellectual disability that is inherited in an X-linked manner, often associated with mutations in the FMR1 gene.
  • Autism Spectrum Disorders - Individuals presenting with symptoms of autism may be evaluated for FMR1 gene mutations, as there is a notable association with Fragile X syndrome.
  • Premature Ovarian Failure - Women with a family history of early ovarian insufficiency may undergo testing to assess for FMR1 gene mutations that could predispose them to this condition.
  • Parkinson's Disease - Some studies suggest a potential link between FMR1 mutations and the development of Parkinson's disease, prompting genetic evaluation.
  • Learning Disabilities - Children exhibiting learning difficulties may be tested for FMR1 gene abnormalities to rule out Fragile X syndrome as a contributing factor.

2. Procedure

The procedure for CPT® Code 81243 involves several key steps to accurately analyze the FMR1 gene for abnormal or expanded alleles. The following procedural steps are undertaken:

  • Sample Collection - A biological sample, typically blood or saliva, is collected from the patient to obtain DNA for analysis. This sample serves as the basis for the genetic testing.
  • DNA Extraction - The DNA is extracted from the collected sample using standardized laboratory techniques to ensure purity and integrity for subsequent analysis.
  • Polymerase Chain Reaction (PCR) - The extracted DNA undergoes PCR amplification, a process that selectively replicates the FMR1 gene region of interest, allowing for sufficient quantities of DNA to be analyzed.
  • Sequencing Analysis - The amplified DNA is then subjected to sequencing to determine the number of CGG repeats in the FMR1 gene. This step is critical for identifying whether the gene exhibits normal, premutation, or full mutation characteristics.
  • Data Interpretation - The results of the sequencing are interpreted by a qualified geneticist or laboratory specialist, who assesses the findings to determine the presence of abnormal or expanded alleles.
  • Reporting - A comprehensive report is generated, detailing the findings of the FMR1 gene analysis, including the number of CGG repeats and any identified mutations. This report is then provided to the referring physician for further clinical decision-making.

3. Post-Procedure

After the FMR1 gene analysis is completed, the following post-procedure considerations are important for patient care and follow-up:

Patients may receive genetic counseling to discuss the implications of the test results, especially if a mutation is identified. This counseling can help patients and their families understand the potential risks for Fragile X syndrome and related conditions, as well as the options available for management and support. Additionally, if a premutation is detected, patients may be informed about the increased risk of developing associated conditions such as FXTAS or premature ovarian failure. Regular follow-up appointments may be recommended to monitor any emerging symptoms or health issues related to the identified genetic risk. Overall, the results of the FMR1 gene analysis play a crucial role in guiding clinical management and support for affected individuals and their families.

Short Descr FMR1 GEN ALY DETC ABNL ALLEL
Medium Descr FMR1 GENE ALYS EVAL TO DETECT ABNORMAL ALLELES
Long Descr FMR1 (fragile X messenger ribonucleoprotein 1) (eg, fragile X syndrome, X-linked intellectual disability [XLID]) gene analysis; evaluation to detect abnormal (eg, expanded) alleles
Status Code Statutory Exclusion (from MPFS, may be paid under other methodologies)
Global Days XXX - Global Concept Does Not Apply
PC/TC Indicator (26, TC) 9 - Not Applicable
Multiple Procedures (51) 9 - Concept does not apply.
Bilateral Surgery (50) 9 - Concept does not apply.
Physician Supervisions 09 - Concept does not apply.
Assistant Surgeon (80, 82) 9 - Concept does not apply.
Co-Surgeons (62) 9 - Concept does not apply.
Team Surgery (66) 9 - Concept does not apply.
Diagnostic Imaging Family 99 - Concept Does Not Apply
CLIA Waived (QW) No
APC Status Indicator Service Paid under Fee Schedule or Payment System other than OPPS
Type of Service (TOS) 5 - Diagnostic Laboratory
Berenson-Eggers TOS (BETOS) T1H - Lab tests - other (non-Medicare fee schedule)
MUE 1
CCS Clinical Classification 234 - Pathology
90 Reference (outside) laboratory: when laboratory procedures are performed by a party other than the treating or reporting physician or other qualified health care professional, the procedure may be identified by adding modifier 90 to the usual procedure number.
GW Service not related to the hospice patient's terminal condition
59 Distinct procedural service: under certain circumstances, it may be necessary to indicate that a procedure or service was distinct or independent from other non-e/m services performed on the same day. modifier 59 is used to identify procedures/services, other than e/m services, that are not normally reported together, but are appropriate under the circumstances. documentation must support a different session, different procedure or surgery, different site or organ system, separate incision/excision, separate lesion, or separate injury (or area of injury in extensive injuries) not ordinarily encountered or performed on the same day by the same individual. however, when another already established modifier is appropriate it should be used rather than modifier 59. only if no more descriptive modifier is available, and the use of modifier 59 best explains the circumstances, should modifier 59 be used. note: modifier 59 should not be appended to an e/m service. to report a separate and distinct e/m service with a non-e/m service performed on the same date, see modifier 25.
GA Waiver of liability statement issued as required by payer policy, individual case
GV Attending physician not employed or paid under arrangement by the patient's hospice provider
GZ Item or service expected to be denied as not reasonable and necessary
XS Separate structure, a service that is distinct because it was performed on a separate organ/structure
XU Unusual non-overlapping service, the use of a service that is distinct because it does not overlap usual components of the main service
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2024-01-01 Changed Short and Long Descriptions changed.
2014-01-01 Changed Code description changed.
2012-01-01 Added Added
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