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Official Description

FMR1 (fragile X messenger ribonucleoprotein 1) (eg, fragile X syndrome, X-linked intellectual disability [XLID]) gene analysis; characterization of alleles (eg, expanded size and promoter methylation status)

© Copyright 2025 American Medical Association. All rights reserved.

Common Language Description

The CPT® Code 81244 pertains to the molecular genetic testing of the FMR1 gene, which is crucial for diagnosing conditions such as Fragile X syndrome and X-linked intellectual disability (XLID). This gene is located on the X chromosome and is responsible for coding the fragile X messenger ribonucleoprotein 1 (FMR1 protein). The FMR1 protein plays a vital role in the development of normal synapses in the brain, particularly in processes related to synaptic plasticity, which is essential for learning and memory. A properly functioning FMR1 protein is necessary for normal cognitive development and female reproductive health. Mutations in the FMR1 gene can lead to a range of disorders, including Fragile X syndrome, mental retardation, autism spectrum disorders, premature ovarian failure, and even Parkinson's disease. The gene's normal sequence consists of a repeating pattern of cytosine-guanine-guanine (CGG) nucleotides, which can vary in number. Typically, this segment repeats between 4 and 44 times. However, when the repeats increase to between 45 and 54, individuals may be at borderline risk for expressing characteristics of Fragile X syndrome. A pre-mutation is identified when the repeats range from 55 to 200, while a full mutation occurs with more than 200 repeats. The analysis performed under CPT® Code 81244 specifically characterizes these alleles, including their expanded sizes and the status of promoter methylation, which is critical for understanding the potential risks and manifestations of associated conditions.

© Copyright 2025 Coding Ahead. All rights reserved.

1. Indications

The FMR1 gene analysis performed under CPT® Code 81244 is indicated for the following conditions and symptoms:

  • Fragile X Syndrome - A genetic condition that causes a range of developmental problems including learning disabilities and cognitive impairment.
  • X-Linked Intellectual Disability (XLID) - A form of intellectual disability that is linked to mutations on the X chromosome.
  • Autism Spectrum Disorders - A group of developmental disorders characterized by difficulties with social interaction and communication, as well as restricted and repetitive behavior.
  • Premature Ovarian Failure - A condition where the ovaries stop functioning before the age of 40, which can be associated with FMR1 gene mutations.
  • Parkinson's Disease - A progressive neurological disorder that may have links to mutations in the FMR1 gene.
  • FXTAS (Fragile X-associated Tremor/Ataxia Syndrome) - A late-onset condition that affects movement and cognitive function, associated with pre-mutation expression of the FMR1 gene.

2. Procedure

The procedure for CPT® Code 81244 involves several key steps to analyze the FMR1 gene:

  • Step 1: Sample Collection - A biological sample, typically blood or saliva, is collected from the patient to obtain DNA for analysis.
  • Step 2: DNA Extraction - The DNA is extracted from the collected sample using standard laboratory techniques to ensure purity and integrity for testing.
  • Step 3: PCR Amplification - Polymerase chain reaction (PCR) is employed to amplify the specific region of the FMR1 gene that contains the CGG repeat sequence, allowing for detailed analysis of the gene's structure.
  • Step 4: Allele Characterization - The amplified DNA is analyzed to characterize the alleles, focusing on the number of CGG repeats and assessing the promoter methylation status, which can influence gene expression.
  • Step 5: Interpretation of Results - The results are interpreted by a qualified geneticist or laboratory specialist, who will determine if the alleles are normal, pre-mutation, or full mutation, and provide insights into the implications for the patient.

3. Post-Procedure

After the FMR1 gene analysis under CPT® Code 81244, patients may receive genetic counseling to discuss the results and their implications. If a mutation is identified, further evaluations may be recommended to assess associated risks, particularly for conditions like FXTAS or premature ovarian failure. Patients and their families may also be informed about the potential for learning disabilities or developmental issues in children. Follow-up appointments may be scheduled to monitor any emerging symptoms or to provide additional support and resources as needed.

Short Descr FMR1 GEN ALYS CHARAC ALLELES
Medium Descr FMR1 GENE ANALYSIS CHARACTERIZATION OF ALLELES
Long Descr FMR1 (fragile X messenger ribonucleoprotein 1) (eg, fragile X syndrome, X-linked intellectual disability [XLID]) gene analysis; characterization of alleles (eg, expanded size and promoter methylation status)
Status Code Statutory Exclusion (from MPFS, may be paid under other methodologies)
Global Days XXX - Global Concept Does Not Apply
PC/TC Indicator (26, TC) 9 - Not Applicable
Multiple Procedures (51) 9 - Concept does not apply.
Bilateral Surgery (50) 9 - Concept does not apply.
Physician Supervisions 09 - Concept does not apply.
Assistant Surgeon (80, 82) 9 - Concept does not apply.
Co-Surgeons (62) 9 - Concept does not apply.
Team Surgery (66) 9 - Concept does not apply.
Diagnostic Imaging Family 99 - Concept Does Not Apply
CLIA Waived (QW) No
APC Status Indicator Service Paid under Fee Schedule or Payment System other than OPPS
Type of Service (TOS) 5 - Diagnostic Laboratory
Berenson-Eggers TOS (BETOS) T1H - Lab tests - other (non-Medicare fee schedule)
MUE 1
CCS Clinical Classification 234 - Pathology
90 Reference (outside) laboratory: when laboratory procedures are performed by a party other than the treating or reporting physician or other qualified health care professional, the procedure may be identified by adding modifier 90 to the usual procedure number.
XS Separate structure, a service that is distinct because it was performed on a separate organ/structure
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2024-01-01 Changed Short and Long Descriptions changed.
2019-01-01 Changed Description Changed
2012-01-01 Added Added
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