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Official Description

Molecular pathology procedure, Level 8 (eg, analysis of 26-50 exons by DNA sequence analysis, mutation scanning or duplication/deletion variants of >50 exons, sequence analysis of multiple genes on one platform)

ABCC8 (ATP-binding cassette, sub-family C [CFTR/MRP], member 8) (eg, familial hyperinsulinism), full gene sequence

AGL (amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase) (eg, glycogen storage disease type III), full gene sequence

AHI1 (Abelson helper integration site 1) (eg, Joubert syndrome), full gene sequence

APOB (apolipoprotein B) (eg, familial hypercholesterolemia type B) full gene sequence

ASPM (asp [abnormal spindle] homolog, microcephaly associated [Drosophila]) (eg, primary microcephaly), full gene sequence

CHD7 (chromodomain helicase DNA binding protein 7) (eg, CHARGE syndrome), full gene sequence

COL4A4 (collagen, type IV, alpha 4) (eg, Alport syndrome), full gene sequence

COL4A5 (collagen, type IV, alpha 5) (eg, Alport syndrome), duplication/deletion analysis

COL6A1 (collagen, type VI, alpha 1) (eg, collagen type VI-related disorders), full gene sequence

COL6A2 (collagen, type VI, alpha 2) (eg, collagen type VI-related disorders), full gene sequence

COL6A3 (collagen, type VI, alpha 3) (eg, collagen type VI-related disorders), full gene sequence

CREBBP (CREB binding protein) (eg, Rubinstein-Taybi syndrome), full gene sequence

F8 (coagulation factor VIII) (eg, hemophilia A), full gene sequence

JAG1 (jagged 1) (eg, Alagille syndrome), full gene sequence

KDM5C (lysine demethylase 5C) (eg, X-linked intellectual disability), full gene sequence

KIAA0196 (KIAA0196) (eg, spastic paraplegia), full gene sequence

L1CAM (L1 cell adhesion molecule) (eg, MASA syndrome, X-linked hydrocephaly), full gene sequence

LAMB2 (laminin, beta 2 [laminin S]) (eg, Pierson syndrome), full gene sequence

MYBPC3 (myosin binding protein C, cardiac) (eg, familial hypertrophic cardiomyopathy), full gene sequence

MYH6 (myosin, heavy chain 6, cardiac muscle, alpha) (eg, familial dilated cardiomyopathy), full gene sequence

MYH7 (myosin, heavy chain 7, cardiac muscle, beta) (eg, familial hypertrophic cardiomyopathy, Liang distal myopathy), full gene sequence

MYO7A (myosin VIIA) (eg, Usher syndrome, type 1), full gene sequence

NOTCH1 (notch 1) (eg, aortic valve disease), full gene sequence

NPHS1 (nephrosis 1, congenital, Finnish type [nephrin]) (eg, congenital Finnish nephrosis), full gene sequence OPA1 (optic atrophy 1) (eg, optic atrophy), full gene sequence

PCDH15 (protocadherin-related 15) (eg, Usher syndrome, type 1), full gene sequence

PKD1 (polycystic kidney disease 1 [autosomal dominant]) (eg, polycystic kidney disease), full gene sequence

PLCE1 (phospholipase C, epsilon 1) (eg, nephrotic syndrome type 3), full gene sequence

SCN1A (sodium channel, voltage-gated, type 1, alpha subunit) (eg, generalized epilepsy with febrile seizures), full gene sequence

SCN5A (sodium channel, voltage-gated, type V, alpha subunit) (eg, familial dilated cardiomyopathy), full gene sequence

SLC12A1 (solute carrier family 12 [sodium/potassium/chloride transporters], member 1) (eg, Bartter syndrome), full gene sequence

SLC12A3 (solute carrier family 12 [sodium/chloride transporters], member 3) (eg, Gitelman syndrome), full gene sequence

SPG11 (spastic paraplegia 11 [autosomal recessive]) (eg, spastic paraplegia), full gene sequence

SPTBN2 (spectrin, beta, non-erythrocytic 2) (eg, spinocerebellar ataxia), full gene sequence

TMEM67 (transmembrane protein 67) (eg, Joubert syndrome), full gene sequence

TSC2 (tuberous sclerosis 2) (eg, tuberous sclerosis), full gene sequence

USH1C (Usher syndrome 1C [autosomal recessive, severe]) (eg, Usher syndrome, type 1), full gene sequence

VPS13B (vacuolar protein sorting 13 homolog B [yeast]) (eg, Cohen syndrome), duplication/deletion analysis

WDR62 (WD repeat domain 62) (eg, primary autosomal recessive microcephaly), full gene sequence

© Copyright 2025 American Medical Association. All rights reserved.

Common Language Description

Molecular pathology procedures represent a specialized area of laboratory medicine focused on the analysis of genetic material to diagnose and manage various medical conditions. These tests are essential for identifying genetic disorders, cancers, infectious diseases, and assessing tissue compatibility in transplant scenarios. The complexity of these procedures is categorized into levels, with Level 8 indicating a high degree of intricacy. Specifically, Level 8 procedures involve the analysis of 26 to 50 exons through methods such as DNA sequence analysis, mutation scanning, or the evaluation of duplication and deletion variants affecting more than 50 exons. Additionally, this level encompasses the simultaneous sequence analysis of multiple genes on a single platform, which enhances the efficiency and comprehensiveness of genetic testing. The process begins with a thorough review of the patient's medical history and clinical findings, alongside results from other diagnostic tests. This comprehensive evaluation is crucial for the molecular pathologist to determine the appropriate testing strategy. Once the Level 8 test is conducted, the pathologist interprets the results, synthesizing the data into a detailed written report that outlines the findings and their implications for the patient's health. It is important to note that while specific tests are identified under CPT® Code 81407, other molecular pathology procedures that require similar expertise and resources, yet lack a more specific code, may also be reported using this code. This ensures that all relevant molecular pathology services are accurately captured for billing and documentation purposes.

© Copyright 2025 Coding Ahead. All rights reserved.

1. Indications

The following conditions and symptoms are explicitly indicated for the performance of Level 8 molecular pathology procedures under CPT® Code 81407:

  • Familial Hyperinsulinism - Associated with mutations in the ABCC8 gene.
  • Glycogen Storage Disease Type III - Related to mutations in the AGL gene.
  • Joubert Syndrome - Linked to mutations in the AHI1 gene.
  • Familial Hypercholesterolemia Type B - Associated with mutations in the APOB gene.
  • Primary Microcephaly - Related to mutations in the ASPM gene.
  • CHARGE Syndrome - Linked to mutations in the CHD7 gene.
  • Alport Syndrome - Associated with mutations in the COL4A4 and COL4A5 genes.
  • Collagen Type VI-Related Disorders - Related to mutations in the COL6A1, COL6A2, and COL6A3 genes.
  • Rubinstein-Taybi Syndrome - Linked to mutations in the CREBBP gene.
  • Hemophilia A - Associated with mutations in the F8 gene.
  • Alagille Syndrome - Related to mutations in the JAG1 gene.
  • X-Linked Intellectual Disability - Linked to mutations in the KDM5C gene.
  • Spastic Paraplegia - Associated with mutations in the KIAA0196 gene.
  • MASA Syndrome and X-Linked Hydrocephaly - Related to mutations in the L1CAM gene.
  • Pierson Syndrome - Linked to mutations in the LAMB2 gene.
  • Familial Hypertrophic Cardiomyopathy - Associated with mutations in the MYBPC3 gene.
  • Familial Dilated Cardiomyopathy - Related to mutations in the MYH6 and MYH7 genes.
  • Usher Syndrome, Type 1 - Linked to mutations in the MYO7A gene.
  • Aortic Valve Disease - Associated with mutations in the NOTCH1 gene.
  • Congenital Finnish Nephrosis - Related to mutations in the NPHS1 gene.
  • Polycystic Kidney Disease - Linked to mutations in the PKD1 gene.
  • Nephrotic Syndrome Type 3 - Associated with mutations in the PLCE1 gene.
  • Generalized Epilepsy with Febrile Seizures - Related to mutations in the SCN1A gene.
  • Familial Dilated Cardiomyopathy - Linked to mutations in the SCN5A gene.
  • Bartter Syndrome - Associated with mutations in the SLC12A1 gene.
  • Gitelman Syndrome - Related to mutations in the SLC12A3 gene.
  • Spastic Paraplegia - Linked to mutations in the SPG11 gene.
  • Spinocerebellar Ataxia - Associated with mutations in the SPTBN2 gene.
  • Joubert Syndrome - Related to mutations in the TMEM67 gene.
  • Tuberous Sclerosis - Linked to mutations in the TSC2 gene.
  • Usher Syndrome, Type 1 - Associated with mutations in the USH1C gene.
  • Cohen Syndrome - Related to mutations in the VPS13B gene.
  • Primary Autosomal Recessive Microcephaly - Linked to mutations in the WDR62 gene.

2. Procedure

The procedure for performing a Level 8 molecular pathology test involves several critical steps that ensure accurate analysis and interpretation of genetic material. The following procedural steps are outlined:

  • Step 1: Patient Evaluation - The process begins with a comprehensive evaluation of the patient's medical history and clinical findings. This assessment is crucial for determining the relevance of the molecular pathology test and guiding the selection of specific genes to analyze.
  • Step 2: Sample Collection - A biological sample, typically blood or tissue, is collected from the patient. This sample serves as the source of DNA for subsequent analysis.
  • Step 3: DNA Extraction - The DNA is extracted from the collected sample using standardized laboratory techniques. This step is essential to isolate the genetic material needed for testing.
  • Step 4: DNA Analysis - The extracted DNA undergoes various analyses, including sequencing of 26 to 50 exons, mutation scanning, or duplication/deletion variant analysis of more than 50 exons. This step may also involve the simultaneous analysis of multiple genes on a single platform, enhancing the efficiency of the testing process.
  • Step 5: Data Interpretation - After the analysis is complete, the molecular pathologist interprets the results, correlating them with the patient's clinical information and other diagnostic findings. This interpretation is critical for understanding the implications of the genetic findings.
  • Step 6: Reporting - A detailed written report is generated, summarizing the findings of the molecular pathology test. This report includes information on any identified mutations, their potential clinical significance, and recommendations for further management or testing if necessary.

3. Post-Procedure

Following the completion of the Level 8 molecular pathology procedure, the patient may require follow-up consultations to discuss the results and their implications. The molecular pathologist will provide a comprehensive report that outlines the findings, which can guide further clinical decision-making. Depending on the results, additional testing or referrals to specialists may be recommended. It is essential for healthcare providers to communicate the results effectively to the patient and to consider the potential impact on treatment options and family planning. Continuous monitoring and support may also be necessary, especially in cases involving hereditary conditions.

Short Descr MOPATH PROCEDURE LEVEL 8
Medium Descr MOLECULAR PATHOLOGY PROCEDURE LEVEL 8
Long Descr Molecular pathology procedure, Level 8 (eg, analysis of 26-50 exons by DNA sequence analysis, mutation scanning or duplication/deletion variants of >50 exons, sequence analysis of multiple genes on one platform) ABCC8 (ATP-binding cassette, sub-family C [CFTR/MRP], member 8) (eg, familial hyperinsulinism), full gene sequence AGL (amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase) (eg, glycogen storage disease type III), full gene sequence AHI1 (Abelson helper integration site 1) (eg, Joubert syndrome), full gene sequence APOB (apolipoprotein B) (eg, familial hypercholesterolemia type B) full gene sequence ASPM (asp [abnormal spindle] homolog, microcephaly associated [Drosophila]) (eg, primary microcephaly), full gene sequence CHD7 (chromodomain helicase DNA binding protein 7) (eg, CHARGE syndrome), full gene sequence COL4A4 (collagen, type IV, alpha 4) (eg, Alport syndrome), full gene sequence COL4A5 (collagen, type IV, alpha 5) (eg, Alport syndrome), duplication/deletion analysis COL6A1 (collagen, type VI, alpha 1) (eg, collagen type VI-related disorders), full gene sequence COL6A2 (collagen, type VI, alpha 2) (eg, collagen type VI-related disorders), full gene sequence COL6A3 (collagen, type VI, alpha 3) (eg, collagen type VI-related disorders), full gene sequence CREBBP (CREB binding protein) (eg, Rubinstein-Taybi syndrome), full gene sequence F8 (coagulation factor VIII) (eg, hemophilia A), full gene sequence JAG1 (jagged 1) (eg, Alagille syndrome), full gene sequence KDM5C (lysine demethylase 5C) (eg, X-linked intellectual disability), full gene sequence KIAA0196 (KIAA0196) (eg, spastic paraplegia), full gene sequence L1CAM (L1 cell adhesion molecule) (eg, MASA syndrome, X-linked hydrocephaly), full gene sequence LAMB2 (laminin, beta 2 [laminin S]) (eg, Pierson syndrome), full gene sequence MYBPC3 (myosin binding protein C, cardiac) (eg, familial hypertrophic cardiomyopathy), full gene sequence MYH6 (myosin, heavy chain 6, cardiac muscle, alpha) (eg, familial dilated cardiomyopathy), full gene sequence MYH7 (myosin, heavy chain 7, cardiac muscle, beta) (eg, familial hypertrophic cardiomyopathy, Liang distal myopathy), full gene sequence MYO7A (myosin VIIA) (eg, Usher syndrome, type 1), full gene sequence NOTCH1 (notch 1) (eg, aortic valve disease), full gene sequence NPHS1 (nephrosis 1, congenital, Finnish type [nephrin]) (eg, congenital Finnish nephrosis), full gene sequence OPA1 (optic atrophy 1) (eg, optic atrophy), full gene sequence PCDH15 (protocadherin-related 15) (eg, Usher syndrome, type 1), full gene sequence PKD1 (polycystic kidney disease 1 [autosomal dominant]) (eg, polycystic kidney disease), full gene sequence PLCE1 (phospholipase C, epsilon 1) (eg, nephrotic syndrome type 3), full gene sequence SCN1A (sodium channel, voltage-gated, type 1, alpha subunit) (eg, generalized epilepsy with febrile seizures), full gene sequence SCN5A (sodium channel, voltage-gated, type V, alpha subunit) (eg, familial dilated cardiomyopathy), full gene sequence SLC12A1 (solute carrier family 12 [sodium/potassium/chloride transporters], member 1) (eg, Bartter syndrome), full gene sequence SLC12A3 (solute carrier family 12 [sodium/chloride transporters], member 3) (eg, Gitelman syndrome), full gene sequence SPG11 (spastic paraplegia 11 [autosomal recessive]) (eg, spastic paraplegia), full gene sequence SPTBN2 (spectrin, beta, non-erythrocytic 2) (eg, spinocerebellar ataxia), full gene sequence TMEM67 (transmembrane protein 67) (eg, Joubert syndrome), full gene sequence TSC2 (tuberous sclerosis 2) (eg, tuberous sclerosis), full gene sequence USH1C (Usher syndrome 1C [autosomal recessive, severe]) (eg, Usher syndrome, type 1), full gene sequence VPS13B (vacuolar protein sorting 13 homolog B [yeast]) (eg, Cohen syndrome), duplication/deletion analysis WDR62 (WD repeat domain 62) (eg, primary autosomal recessive microcephaly), full gene sequence
Status Code Statutory Exclusion (from MPFS, may be paid under other methodologies)
Global Days XXX - Global Concept Does Not Apply
PC/TC Indicator (26, TC) 9 - Not Applicable
Multiple Procedures (51) 9 - Concept does not apply.
Bilateral Surgery (50) 9 - Concept does not apply.
Physician Supervisions 09 - Concept does not apply.
Assistant Surgeon (80, 82) 9 - Concept does not apply.
Co-Surgeons (62) 9 - Concept does not apply.
Team Surgery (66) 9 - Concept does not apply.
Diagnostic Imaging Family 99 - Concept Does Not Apply
CLIA Waived (QW) No
APC Status Indicator Service Paid under Fee Schedule or Payment System other than OPPS
Type of Service (TOS) 5 - Diagnostic Laboratory
Berenson-Eggers TOS (BETOS) T1H - Lab tests - other (non-Medicare fee schedule)
MUE 1
CCS Clinical Classification 234 - Pathology
90 Reference (outside) laboratory: when laboratory procedures are performed by a party other than the treating or reporting physician or other qualified health care professional, the procedure may be identified by adding modifier 90 to the usual procedure number.
XS Separate structure, a service that is distinct because it was performed on a separate organ/structure
59 Distinct procedural service: under certain circumstances, it may be necessary to indicate that a procedure or service was distinct or independent from other non-e/m services performed on the same day. modifier 59 is used to identify procedures/services, other than e/m services, that are not normally reported together, but are appropriate under the circumstances. documentation must support a different session, different procedure or surgery, different site or organ system, separate incision/excision, separate lesion, or separate injury (or area of injury in extensive injuries) not ordinarily encountered or performed on the same day by the same individual. however, when another already established modifier is appropriate it should be used rather than modifier 59. only if no more descriptive modifier is available, and the use of modifier 59 best explains the circumstances, should modifier 59 be used. note: modifier 59 should not be appended to an e/m service. to report a separate and distinct e/m service with a non-e/m service performed on the same date, see modifier 25.
XU Unusual non-overlapping service, the use of a service that is distinct because it does not overlap usual components of the main service
GA Waiver of liability statement issued as required by payer policy, individual case
GV Attending physician not employed or paid under arrangement by the patient's hospice provider
GW Service not related to the hospice patient's terminal condition
GY Item or service statutorily excluded, does not meet the definition of any medicare benefit or, for non-medicare insurers, is not a contract benefit
GZ Item or service expected to be denied as not reasonable and necessary
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2024-01-01 Changed Long Description changed.
2020-01-01 Changed Code description changed.
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2018-01-01 Changed Code description changed.
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