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Official Description

Exome (eg, unexplained constitutional or heritable disorder or syndrome); sequence analysis

© Copyright 2025 American Medical Association. All rights reserved.

Common Language Description

Exome sequencing, as described by CPT® Code 81415, refers to a specialized molecular genetic testing technique that focuses on the exome, which is the portion of the genome that contains the coding sequences of genes. This procedure is particularly valuable in the context of unexplained constitutional or heritable disorders or syndromes, where traditional diagnostic methods may not yield conclusive results. The exome encompasses approximately 180,000 exons, which represent about 1-2% of the entire genome but are responsible for approximately 85% of known heritable disease-causing mutations. By utilizing whole exome sequencing (WES), healthcare providers can identify genetic variants that may be responsible for a patient's condition, especially in cases where multiple anomalies are present and a genetic disorder is suspected. The testing process involves obtaining a blood sample through a separately reportable venipuncture, which is then analyzed using Next Generation Sequencing (NGS) technology. This advanced method allows for the detection of various genomic variants, including single nucleotide variants (SNVs), small insertions or deletions of DNA (indels), copy number variants (CNVs), and other structural variants (SVs). The results of this analysis can provide critical insights into the genetic underpinnings of a patient's condition, guiding further clinical management and potential treatment options.

© Copyright 2025 Coding Ahead. All rights reserved.

1. Indications

Exome sequencing (CPT® Code 81415) is indicated for patients who present with unexplained constitutional or heritable disorders or syndromes. This testing is particularly relevant in the following scenarios:

  • Unexplained Genetic Disorders Patients exhibiting multiple anomalies or symptoms suggestive of a genetic disorder without a clear diagnosis.
  • Heritable Syndromes Individuals with a family history of genetic conditions where the specific genetic cause has not been identified.
  • Diagnostic Challenges Cases where traditional diagnostic methods have failed to provide conclusive results, necessitating a deeper investigation into the genetic basis of the condition.

2. Procedure

The procedure for exome sequencing involves several critical steps to ensure accurate and comprehensive analysis of the patient's genetic material. The following outlines the procedural steps:

  • Step 1: Sample Collection A blood sample is obtained from the patient through a separately reportable venipuncture. This sample serves as the source of DNA for subsequent analysis.
  • Step 2: DNA Extraction The DNA is extracted from the collected blood sample using standard laboratory techniques to ensure high-quality genetic material for sequencing.
  • Step 3: Exome Capture The extracted DNA undergoes exome capture, where the targeted regions of the genome, specifically the exons, are isolated for sequencing. This step focuses on the functionally important sequences that are most likely to harbor disease-causing mutations.
  • Step 4: Next Generation Sequencing (NGS) The captured exome is then subjected to Next Generation Sequencing technology, which allows for the simultaneous analysis of multiple genetic variants across the exome. This high-throughput method provides a comprehensive view of the genetic landscape.
  • Step 5: Data Analysis The sequencing data is analyzed using bioinformatics tools to identify variants, including single nucleotide variants (SNVs), small insertions or deletions (indels), copy number variants (CNVs), and other structural variants (SVs). This analysis helps in determining the potential clinical significance of the identified variants.
  • Step 6: Reporting The results of the exome sequencing are compiled into a report that details the identified genetic variants, their potential implications, and recommendations for further clinical management or testing.

3. Post-Procedure

After the exome sequencing procedure, the patient may require follow-up consultations to discuss the results and their implications. The healthcare provider will review the findings with the patient and may recommend additional testing or referrals to genetic specialists based on the identified variants. It is important to consider the emotional and psychological impact of receiving genetic information, and appropriate support should be provided. Additionally, the results may inform treatment options or management strategies for the patient's condition, and ongoing monitoring may be necessary to address any emerging health issues related to the identified genetic variants.

Short Descr EXOME SEQUENCE ANALYSIS
Medium Descr EXOME SEQUENCE ANALYSIS
Long Descr Exome (eg, unexplained constitutional or heritable disorder or syndrome); sequence analysis
Status Code Statutory Exclusion (from MPFS, may be paid under other methodologies)
Global Days XXX - Global Concept Does Not Apply
PC/TC Indicator (26, TC) 9 - Not Applicable
Multiple Procedures (51) 9 - Concept does not apply.
Bilateral Surgery (50) 9 - Concept does not apply.
Physician Supervisions 09 - Concept does not apply.
Assistant Surgeon (80, 82) 9 - Concept does not apply.
Co-Surgeons (62) 9 - Concept does not apply.
Team Surgery (66) 9 - Concept does not apply.
Diagnostic Imaging Family 99 - Concept Does Not Apply
CLIA Waived (QW) No
APC Status Indicator Service Paid under Fee Schedule or Payment System other than OPPS
Type of Service (TOS) 5 - Diagnostic Laboratory
Berenson-Eggers TOS (BETOS) T1H - Lab tests - other (non-Medicare fee schedule)
MUE 1

This is a primary code that can be used with these additional add-on codes.

81416 Addon Code MPFS Status: Statutory exclusion (from MPFS, may be paid under other methodologies) APC A Exome (eg, unexplained constitutional or heritable disorder or syndrome); sequence analysis, each comparator exome (eg, parents, siblings) (List separately in addition to code for primary procedure)
90 Reference (outside) laboratory: when laboratory procedures are performed by a party other than the treating or reporting physician or other qualified health care professional, the procedure may be identified by adding modifier 90 to the usual procedure number.
GA Waiver of liability statement issued as required by payer policy, individual case
Date
Action
Notes
2015-01-01 Added Added
Code
Description
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