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Official Description

Exome (eg, unexplained constitutional or heritable disorder or syndrome); re-evaluation of previously obtained exome sequence (eg, updated knowledge or unrelated condition/syndrome)

© Copyright 2025 American Medical Association. All rights reserved.

Common Language Description

The CPT® Code 81417 pertains to the re-evaluation of previously obtained exome sequencing, which is a specialized form of molecular genetic testing. This testing focuses on the exome, the portion of the genome that contains the sequences of protein-coding DNA, which are crucial for understanding genetic disorders. Exome sequencing is particularly valuable in cases where patients present with multiple anomalies and a genetic disorder is suspected but not yet identified. By analyzing the exome, healthcare professionals can identify disease-causing genetic variants and gene targets that may be responsible for the patient's condition. This method is cost-effective and allows for the examination of approximately 180,000 exomes, covering about 85% of mutations that lead to heritable diseases. The testing process involves obtaining a blood sample through a separate venipuncture procedure, which is then analyzed using Next Generation Sequencing (NGS) technology. This advanced technique enables the detection of various genomic variants, including single nucleotide variants (SNVs), small DNA insertions or deletions (indels), copy number variants (CNVs), and other structural variants (SVs). The re-evaluation indicated by code 81417 is particularly relevant when there is updated knowledge regarding genetic conditions or when assessing unrelated conditions or syndromes that may not have been previously considered.

© Copyright 2025 Coding Ahead. All rights reserved.

1. Indications

The indications for performing the procedure associated with CPT® Code 81417 include the following:

  • Unexplained Constitutional Disorder The procedure is indicated for patients who present with a constitutional disorder that has not been previously explained through standard diagnostic methods.
  • Heritable Disorder or Syndrome It is also indicated for individuals suspected of having a heritable disorder or syndrome, where genetic testing may provide insights into the underlying genetic causes.
  • Re-evaluation of Previous Exome Sequence The procedure is warranted when there is a need to re-evaluate a previously obtained exome sequence due to updated knowledge in the field of genetics or when assessing for unrelated conditions or syndromes that may have emerged since the initial analysis.

2. Procedure

The procedure for CPT® Code 81417 involves several key steps, which are detailed as follows:

  • Step 1: Sample Collection A blood sample is obtained from the patient through a separately reportable venipuncture. This sample serves as the source of DNA for the subsequent analysis.
  • Step 2: DNA Extraction The DNA is extracted from the collected blood sample, ensuring that the genetic material is suitable for sequencing. This step is critical for obtaining high-quality results.
  • Step 3: Exome Sequencing The extracted DNA undergoes whole exome sequencing (WES), which focuses on the protein-coding regions of the genome. This process utilizes Next Generation Sequencing (NGS) technology to analyze the exome in depth.
  • Step 4: Variant Analysis The sequencing results are analyzed to identify genetic variants, including single nucleotide variants (SNVs), small DNA insertions or deletions (indels), copy number variants (CNVs), and other structural variants (SVs). This analysis aims to uncover potential disease-causing mutations.
  • Step 5: Interpretation of Results The identified variants are interpreted in the context of the patient's clinical presentation and family history. This step may involve comparing the results with existing databases and literature to assess the significance of the findings.

3. Post-Procedure

After the completion of the exome sequencing and analysis, the patient may require follow-up consultations to discuss the results. The healthcare provider will review the findings with the patient, explaining any identified genetic variants and their potential implications for diagnosis, treatment, or management of the condition. Additionally, if new information or updated knowledge regarding genetic conditions becomes available, further evaluations or testing may be recommended. It is essential for the healthcare team to provide appropriate counseling and support to the patient and their family, particularly if the results indicate a heritable condition that may affect other family members.

Short Descr EXOME RE-EVALUATION
Medium Descr EXOME RE-EVAL OF PREVIOUSLY OBTAINED EXOME SEQ
Long Descr Exome (eg, unexplained constitutional or heritable disorder or syndrome); re-evaluation of previously obtained exome sequence (eg, updated knowledge or unrelated condition/syndrome)
Status Code Statutory Exclusion (from MPFS, may be paid under other methodologies)
Global Days XXX - Global Concept Does Not Apply
PC/TC Indicator (26, TC) 9 - Not Applicable
Multiple Procedures (51) 9 - Concept does not apply.
Bilateral Surgery (50) 9 - Concept does not apply.
Physician Supervisions 09 - Concept does not apply.
Assistant Surgeon (80, 82) 9 - Concept does not apply.
Co-Surgeons (62) 9 - Concept does not apply.
Team Surgery (66) 9 - Concept does not apply.
Diagnostic Imaging Family 99 - Concept Does Not Apply
CLIA Waived (QW) No
APC Status Indicator Service Paid under Fee Schedule or Payment System other than OPPS
Type of Service (TOS) 5 - Diagnostic Laboratory
Berenson-Eggers TOS (BETOS) T1H - Lab tests - other (non-Medicare fee schedule)
MUE 1
Date
Action
Notes
2022-01-01 Note Guidelines changed.
2015-01-01 Added Added
Code
Description
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